Example files | Included aggregators | orbi_get_aggregator() | Custom aggregators | orbi_register_aggregator() | Instrument status log | Status log aggregator | Visualizing the status log | Comparison with the scans

Example data | Defining blocks | orbi_define_blocks() | Blocks table | Dual inlet blocks | Adjusting blocks | orbi_adjust_blocks() | Default block with file-specific adjustments | Segmenting blocks | orbi_segment_blocks()

Reading raw files | orbi_find_raw() | orbi_read_raw() * | orbi_aggregate_data() * | bonus orbi_get_problems() | orbi_get_data() | Identifying isotopocules | orbi_identify_isotopocules() * | orbi_plot_spectra() | Data checks | orbi_flag_satellite_peaks() * | orbi_plot_isotopocule_coverage() | Data blocks | Ratio calculations | orbi_define_basepeak() * | orbi_summarize_results() *

Load raw file(s) | Show spectrum | Preprocess data | Define dual inlet blocks | Raw data plots | Plot 1: default block highlights + outliers | Plot 2: highlight blocks in data + no outliers | Plot 3: highlight sample blocks on top | Data summaries | Plot 1: ratios summary by block and segment | Plot 2: ratios with block backgrounds and raw data

Reading isotope files | ir_find_isofiles() * | ir_read_isofiles() * | bonus: combine collections with c() | bonus: ir_save_isofiles() / ir_load_isofiles() | Aggregating data | ir_aggregate_isofiles() * | bonus: intensity units | bonus: ir_get_aggregator() | bonus: ir_register_aggregator() | bonus: ir_get_problems() / ir_show_problems() | Accessing the data | ir_get_data() | shortcuts ir_get_metadata() / ir_get_traces() / ... | bonus: ir_get_vendor_data_table() | ir_filter_metadata() / ir_mutate_metadata() / ir_join_metadata() | bonus: ir_filter_for_continuous_flow() / ir_filter_for_dual_inlet() / ir_filter_for_scans() | ir_filter_masses() | bonus: ir_save_aggregated_data() / ir_load_aggregated_data() | Calculating ratios | ir_calculate_ratios() | bonus: base mass, additive offsets, and normalization | Visualizing data | ir_plot_traces() | bonus: selecting masses and ratios | bonus: ggplot modifications | bonus ir_generate_traces_tibble() / ir_generate_cycles_tibble() / ir_generate_scans_tibble() | ir_plot_dual_inlet() | ir_plot_scans() | Exporting data | ir_export_to_excel() | Package options | bonus ir_options() / ir_get_option()

Data | Load raw file(s) | Identify isotopocules | Processing | Summary