Package: isoorbi 1.3.1

Caj Neubauer

isoorbi: Process Orbitrap Isotopocule Data

Read and process isotopocule data from an Orbitrap Isotope Solutions mass spectrometer. Citation: Kantnerova et al. (Nature Protocols, 2024).

Authors:Caj Neubauer [aut, cre, cph], Sebastian Kopf [aut], Kristýna Kantnerová [aut]

isoorbi_1.3.1.tar.gz
isoorbi_1.3.1.zip(r-4.5)isoorbi_1.3.1.zip(r-4.4)isoorbi_1.3.1.zip(r-4.3)
isoorbi_1.3.1.tgz(r-4.4-any)isoorbi_1.3.1.tgz(r-4.3-any)
isoorbi_1.3.1.tar.gz(r-4.5-noble)isoorbi_1.3.1.tar.gz(r-4.4-noble)
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isoorbi.pdf |isoorbi.html✨
isoorbi/json (API)
NEWS

# Install 'isoorbi' in R:

install.packages('isoorbi', repos = c('https://isoverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/isoverse/isoorbi/issues

On CRAN:

6.18 score 3 stars 17 scripts 211 downloads 31 exports 49 dependencies

Last updated 4 months agofrom:8379b0b779. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 12 2024
R-4.5-win	OK	Nov 12 2024
R-4.5-linux	OK	Nov 12 2024
R-4.4-win	OK	Nov 12 2024
R-4.4-mac	OK	Nov 12 2024
R-4.3-win	OK	Nov 12 2024
R-4.3-mac	OK	Nov 12 2024

Exports:orbi_add_blocks_to_plot orbi_adjust_block orbi_analyze_shot_noise orbi_calculate_ratios orbi_calculate_summarized_ratio orbi_default_theme orbi_define_basepeak orbi_define_block_for_flow_injection orbi_define_blocks_for_dual_inlet orbi_export_data_to_excel orbi_filter_flagged_data orbi_filter_isox orbi_filter_satellite_peaks orbi_filter_scan_intensity orbi_filter_weak_isotopocules orbi_find_isox orbi_flag_outliers orbi_flag_satellite_peaks orbi_flag_weak_isotopocules orbi_get_blocks_info orbi_get_isotopocule_coverage orbi_get_settings orbi_plot_isotopocule_coverage orbi_plot_raw_data orbi_plot_satellite_peaks orbi_plot_shot_noise orbi_read_isox orbi_segment_blocks orbi_set_settings orbi_simplify_isox orbi_summarize_results

Dependencies:bit bit64 cli clipr colorspace cpp11 crayon dplyr fansi farver generics ggplot2 glue gtable hms isoband labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme openxlsx pillar pkgconfig prettyunits progress purrr R6 RColorBrewer Rcpp readr rlang scales stringi stringr tibble tidyr tidyselect tzdb utf8 vctrs viridisLite vroom withr zip

Dual Inlet

Rendered fromdual_inlet.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2023-11-08
Started: 2023-05-06

Flow Injection

Rendered fromflow_injection.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2023-11-08
Started: 2023-11-08

IsoXL demo GUI

Rendered fromisoxl_demo.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2023-10-09
Started: 2023-10-09

Quick start guide

Rendered fromquick_start.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2023-11-08
Started: 2022-10-01

Shot Noise

Rendered fromshot_noise.Rmdusingknitr::rmarkdownon Nov 12 2024.